STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_4012Oxidoreductase domain protein. (480 aa)    
Predicted Functional Partners:
Plim_1708
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_6142 hypothetical protein.
  
     0.764
Plim_0111
PFAM: oxidoreductase domain protein; KEGG: sus:Acid_1336 putative streptomycin biosynthesis protein StrI.
  
     0.742
Plim_0046
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_4919 hypothetical protein.
  
     0.708
Plim_2385
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_7742 hypothetical protein.
  
     0.680
Plim_2940
Protein of unknown function DUF1080.
  
     0.672
Plim_3405
Protein of unknown function DUF1080.
  
     0.655
Plim_3796
Protein of unknown function DUF1080.
  
     0.637
Plim_2356
PFAM: protein of unknown function DUF1080; KEGG: pnu:Pnuc_1112 hypothetical protein.
  
     0.636
Plim_4053
Protein of unknown function DUF1080.
  
     0.628
Plim_0038
PFAM: protein of unknown function DUF1080; KEGG: sus:Acid_2979 hypothetical protein.
  
     0.588
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.