STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_4022Conserved hypothetical protein. (429 aa)    
Predicted Functional Partners:
Plim_4136
Hypothetical protein.
  
     0.768
Plim_2090
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.713
Plim_0117
PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: tbd:Tbd_1475 hypothetical protein.
  
     0.704
Plim_3240
Protein of unknown function DUF1552; KEGG: proteophosphoglycan 5.
  
     0.700
Plim_3241
Protein of unknown function DUF1588; KEGG: proteophosphoglycan 5.
  
     0.693
Plim_1628
KEGG: sus:Acid_5538 hypothetical protein.
  
     0.680
Plim_1151
PFAM: protein of unknown function DUF1549; WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.677
Plim_2339
PFAM: FMN-binding domain protein; KEGG: sse:Ssed_2105 hypothetical protein.
  
     0.677
Plim_2340
KEGG: hypothetical protein.
 
    0.674
Plim_1438
Hypothetical protein; KEGG: dol:Dole_0200 cytochrome c class I.
  
     0.663
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.