Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_4048Cycloartenol synthase-like protein. (348 aa)    
Predicted Functional Partners:
Plim_0903
Squalene cyclase-like protein; KEGG: squalene-hopene-cyclase, putative; K06045 squalene-hopene cyclase.
  
  
  0.924
Plim_1904
KEGG: aba:Acid345_1740 squalene cyclase; TIGRFAM: squalene-hopene cyclase; squalene/oxidosqualene cyclase; PFAM: Prenyltransferase/squalene oxidase.
     
  0.900
Plim_1274
KEGG: scl:sce4409 hypothetical protein.
  
     0.774
Plim_1459
KEGG: Hypothetical protein CBG02561.
  
     0.774
Plim_1449
KEGG: sus:Acid_5040 hypothetical protein.
  
     0.771
Plim_1450
PFAM: protein of unknown function DUF1549; KEGG: sus:Acid_5039 hypothetical protein.
  
     0.764
Plim_1150
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5708 hypothetical protein.
  
     0.736
Plim_1151
PFAM: protein of unknown function DUF1549; WD-40 repeat protein; SMART: WD-40 repeat protein; KEGG: sus:Acid_5709 hypothetical protein.
  
     0.727
Plim_2494
PFAM: protein of unknown function DUF1552; KEGG: scl:sce0554 putative secreted protein.
  
     0.719
Plim_1448
PFAM: protein of unknown function DUF1501; KEGG: sus:Acid_5041 hypothetical protein.
  
     0.714
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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