STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_4083Protein of unknown function DUF1559. (367 aa)    
Predicted Functional Partners:
Plim_4084
Protein of unknown function DUF1559.
 
    
0.700
Plim_4082
PepSY-associated TM helix domain protein.
 
     0.698
Plim_0090
Conserved hypothetical protein; KEGG: outer membrane efflux protein.
  
     0.654
Plim_0513
Hypothetical protein; KEGG: amc:MADE_03505 possible biopolymer transport protein, ExbB family.
  
     0.638
Plim_0607
Hypothetical protein; KEGG: GJ15014 gene product from transcript GJ15014- RA.
  
     0.623
Plim_0931
PFAM: Protein of unknown function DUF1592; Protein of unknown function DUF1588; Protein of unknown function DUF1587; Protein of unknown function DUF1595; protein of unknown function DUF1585; KEGG: sus:Acid_2097 hypothetical protein.
  
     0.622
Plim_4085
ABC-type Co2+ transport system periplasmic component-like protein.
       0.603
Plim_2370
KEGG: sus:Acid_5886 outer membrane efflux protein.
  
     0.599
Plim_3001
Von Willebrand factor type A.
  
     0.599
Plim_3452
Hypothetical protein.
  
     0.597
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.