STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_4089Flavoprotein WrbA. (199 aa)    
Predicted Functional Partners:
menG
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
     
  0.900
Plim_2030
PFAM: Endoribonuclease L-PSP; KEGG: mag:amb2751 putative translation initiation inhibitor.
 
      0.899
Plim_2476
PFAM: Ferritin Dps family protein; KEGG: oan:Oant_0762 ferritin Dps family protein; Belongs to the Dps family.
  
  
 0.803
Plim_0743
KEGG: atc:AGR_C_4472 hypothetical protein.
   
    0.782
Plim_1787
PFAM: Peptidoglycan-binding LysM; SMART: Peptidoglycan-binding LysM; KEGG: Hypothetical protein CBG23547.
   
  
 0.748
Plim_2989
PrkA AAA domain protein.
   
    0.710
Plim_2908
Endoribonuclease L-PSP.
 
      0.642
Plim_0644
KEGG: hypothetical protein.
   
    0.494
Plim_2088
KEGG: hypothetical protein.
   
    0.494
Plim_2204
KEGG: dal:Dalk_1261 hypothetical protein.
   
    0.494
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.