STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_4100FAD linked oxidase domain protein. (441 aa)    
Predicted Functional Partners:
Plim_3498
Protein of unknown function DUF224 cysteine-rich region domain protein.
 
 0.983
Plim_2684
FAD linked oxidase domain protein.
  
 
0.962
Plim_2059
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: sus:Acid_5289 2-keto-3-deoxy-phosphogluconate aldolase.
   
 
 0.912
Plim_0873
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: scl:sce5291 putative phosphoglycolate phosphatase.
    
 0.903
Plim_1387
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sus:Acid_3556 hydrolase.
    
 0.903
Plim_1720
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: abb:ABBFA_002790 IndB protein.
    
 0.903
Plim_1300
PFAM: glutamine cyclotransferase; KEGG: sus:Acid_7734 glutamine cyclotransferase.
    
   0.599
Plim_4099
NHL repeat containing protein.
  
   0.581
Plim_3862
NADH-quinone oxidoreductase, F subunit.
   
 0.485
Plim_0866
PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: bpt:Bpet4348 hypothetical protein.
 
  
 0.472
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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