Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Plim_4102Carbohydrate-selective porin OprB; Belongs to the OprB family. (522 aa)    
Predicted Functional Partners:
Plim_2160
PFAM: amidohydrolase 2; KEGG: bha:BH0493 hypothetical protein.
  
     0.586
Plim_4085
ABC-type Co2+ transport system periplasmic component-like protein.
  
     0.572
Plim_2824
Protein of unknown function DUF1559.
  
     0.538
Plim_4101
RNA polymerase sigma factor.
 
     0.513
Plim_0317
KEGG: dds:Ddes_2379 hypothetical protein.
  
     0.497
Plim_4208
Tetratricopeptide TPR_2 repeat protein.
  
     0.497
Plim_3197
Protein of unknown function DUF1559.
  
     0.485
Plim_3249
Hypothetical protein.
  
     0.476
Plim_3871
Stress responsive alpha-beta barrel domain protein.
  
     0.470
Plim_2616
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.458
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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