STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_4112Polysaccharide export protein; KEGG: hypothetical protein. (378 aa)    
Predicted Functional Partners:
Plim_4111
Capsular exopolysaccharide family.
 
 
 0.992
Plim_3874
Capsular exopolysaccharide family; KEGG: proteophosphoglycan ppg3.
 
 
 0.979
Plim_4110
O-antigen polymerase.
 
  
 0.836
Plim_1055
PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2.
  
 
 0.695
Plim_0633
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: pna:Pnap_3481 sugar transferase.
  
  
 0.655
Plim_3136
Undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.655
Plim_1856
Hypothetical protein; KEGG: sus:Acid_5705 Tfp pilus assembly protein PilE- like protein.
  
     0.637
Plim_0154
SMART: HTTM domain protein; KEGG: bba:Bd2937 hypothetical protein.
  
     0.622
Plim_4167
Polysaccharide biosynthesis protein CapD.
  
  
 0.594
Plim_0462
TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: Beta-ketoacyl synthase; KR domain protein; Acyl transferase; short-chain dehydrogenase/reductase SDR; KEGG: gur:Gura_2012 erythronolide synthase.
 
   
 0.553
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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