Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_4114ABC-2 type transporter. (437 aa)    
Predicted Functional Partners:
Plim_0070
Heme exporter protein CcmA; KEGG: bcr:BCAH187_A1915 ABC transporter, ATP- binding protein; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.767
Plim_0769
PFAM: Abortive infection protein; KEGG: scl:sce0660 putative ABC transporter sodium permease.
  
  
 0.685
Plim_3144
Abortive infection protein.
  
  
 0.685
Plim_1301
PFAM: nitroreductase; KEGG: tcx:Tcr_0053 nitroreductase.
  
    0.652
Plim_1997
PFAM: nitroreductase; KEGG: bba:Bd1162 hypothetical protein.
  
    0.652
Plim_2102
PFAM: nitroreductase; KEGG: bmv:BMASAVP1_A0028 nitroreductase family protein.
  
    0.652
Plim_3673
ABC transporter related protein; KEGG: eba:ebA7253 hypothetical protein.
 
  
 0.595
Plim_4115
HAD-superfamily hydrolase, subfamily IA, variant 1.
       0.554
Plim_4113
Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.499
Plim_0768
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce0659 sodium ABC transporter ATP- binding protein.
 
  
 0.492
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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