STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_4120TadE family protein. (145 aa)    
Predicted Functional Partners:
Plim_0793
PFAM: response regulator receiver; KEGG: ppd:Ppro_2701 response regulator receiver protein.
  
  
 0.717
Plim_0795
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: vpa:VP2420 putative pilus assembly protein.
  
    0.604
Plim_1817
TIGRFAM: Flp pilus assembly protein CpaB; KEGG: reh:H16_A0718 flp pilus assembly protein.
  
    0.604
Plim_4121
Von Willebrand factor type A.
       0.577
Plim_1814
PFAM: type II secretion system protein; KEGG: rso:RSc0651 putative tight adherence TadB- related transmembrane protein.
  
  
 0.513
Plim_1917
PFAM: type II secretion system protein; KEGG: pca:Pcar_1753 Flp pilus assembly protein TadB.
  
  
 0.513
Plim_4122
TadE family protein; KEGG: hypothetical protein.
      
0.451
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.