Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
Plim_4129N-acetylmuramoyl-L-alanine amidase family 2. (406 aa)    
Predicted Functional Partners:
Plim_4130
Hypothetical protein.
       0.815
Plim_4128
Hypothetical protein.
       0.565
Plim_4131
Conserved hypothetical protein.
       0.493
Plim_2836
KEGG: hypothetical protein LOC714502.
  
     0.471
Plim_1210
TIGRFAM: conserved repeat domain protein; KEGG: conserved repeat domain precursor.
  
     0.440
Plim_3884
Hypothetical protein; KEGG: proteophosphoglycan ppg4.
  
     0.439
Plim_2730
Glucosamine/galactosamine-6-phosphate isomerase.
  
     0.434
Plim_3647
Hypothetical protein.
  
     0.426
Plim_3798
Hypothetical protein.
  
     0.415
Plim_4127
Hypothetical protein; KEGG: kinesin K39.
       0.405
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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