Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_4139Band 7 protein. (284 aa)    
Predicted Functional Partners:
Plim_3989
Cytochrome c oxidase, subunit II.
   
 
 0.884
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.873
Plim_1194
PFAM: peptidase M41; KEGG: gur:Gura_0348 hypothetical protein.
   
 0.873
ftsH-2
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
   
 0.873
Plim_2016
Hypothetical protein.
   
 0.860
Plim_0240
PFAM: peptidase M16 domain protein; KEGG: mxa:MXAN_7497 peptidase, M16B (mitochondrial processing peptidase beta-subunit) family.
 
 0.783
Plim_2479
PFAM: peptidase M16 domain protein; KEGG: acr:Acry_1786 processing peptidase.
  
 0.725
Plim_2480
PFAM: peptidase M16 domain protein; KEGG: rfe:RF_0338 Zn-dependent peptidase.
  
 0.725
Plim_2958
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
   0.719
Plim_1432
PFAM: protein of unknown function DUF179; KEGG: mxa:MXAN_2022 hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.695
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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