Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Plim_1055 | Plim_4148 | PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2. | Hypothetical protein. | 0.420 |
Plim_4146 | Plim_4147 | Hypothetical protein. | Hypothetical protein. | 0.450 |
Plim_4146 | Plim_4148 | Hypothetical protein. | Hypothetical protein. | 0.450 |
Plim_4146 | Plim_4149 | Hypothetical protein. | Hypothetical protein; KEGG: predicted gene, 100042430. | 0.450 |
Plim_4146 | Plim_4150 | Hypothetical protein. | Hypothetical protein. | 0.450 |
Plim_4147 | Plim_4146 | Hypothetical protein. | Hypothetical protein. | 0.450 |
Plim_4147 | Plim_4148 | Hypothetical protein. | Hypothetical protein. | 0.773 |
Plim_4147 | Plim_4149 | Hypothetical protein. | Hypothetical protein; KEGG: predicted gene, 100042430. | 0.773 |
Plim_4147 | Plim_4150 | Hypothetical protein. | Hypothetical protein. | 0.773 |
Plim_4147 | Plim_4151 | Hypothetical protein. | Putative RNA methylase; Belongs to the methyltransferase superfamily. | 0.590 |
Plim_4147 | Plim_4152 | Hypothetical protein. | Hypothetical protein. | 0.425 |
Plim_4148 | Plim_1055 | Hypothetical protein. | PFAM: glycosyl transferase family 2; Methyltransferase type 12; Methyltransferase type 11; TPR repeat-containing protein; Methionine biosynthesis MetW protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_3740 glycosyl transferase family 2. | 0.420 |
Plim_4148 | Plim_4146 | Hypothetical protein. | Hypothetical protein. | 0.450 |
Plim_4148 | Plim_4147 | Hypothetical protein. | Hypothetical protein. | 0.773 |
Plim_4148 | Plim_4149 | Hypothetical protein. | Hypothetical protein; KEGG: predicted gene, 100042430. | 0.773 |
Plim_4148 | Plim_4150 | Hypothetical protein. | Hypothetical protein. | 0.773 |
Plim_4148 | Plim_4151 | Hypothetical protein. | Putative RNA methylase; Belongs to the methyltransferase superfamily. | 0.590 |
Plim_4148 | Plim_4152 | Hypothetical protein. | Hypothetical protein. | 0.425 |
Plim_4149 | Plim_4146 | Hypothetical protein; KEGG: predicted gene, 100042430. | Hypothetical protein. | 0.450 |
Plim_4149 | Plim_4147 | Hypothetical protein; KEGG: predicted gene, 100042430. | Hypothetical protein. | 0.773 |
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