Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Plim_4185Xylose isomerase domain protein TIM barrel; KEGG: proteophosphoglycan 5. (273 aa)    
Predicted Functional Partners:
Plim_4183
Hypothetical protein.
       0.689
Plim_4184
Hypothetical protein.
       0.689
Plim_3885
O-antigen polymerase; KEGG: proteophosphoglycan ppg4.
  
     0.582
Plim_1387
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sus:Acid_3556 hydrolase.
  
     0.546
Plim_3793
Demethylmenaquinone methyltransferase-like protein.
  
     0.519
Plim_3314
Hypothetical protein.
  
     0.508
Plim_1808
PFAM: Glycosyl hydrolase family 98 putative carbohydrate binding module; SMART: Glycosyl hydrolase family 98 putative carbohydrate binding module; KEGG: slo:Shew_2289 glycosy hydrolase family protein.
  
     0.495
Plim_3847
Glycoside hydrolase family 10.
  
     0.483
Plim_0551
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_1577 xylose isomerase domain- containing protein.
  
     0.480
Plim_4182
Hypothetical protein.
       0.478
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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