STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_4194Tetratricopeptide TPR_2 repeat protein. (178 aa)    
Predicted Functional Partners:
Plim_1274
KEGG: scl:sce4409 hypothetical protein.
  
     0.751
Plim_4208
Tetratricopeptide TPR_2 repeat protein.
  
     0.744
Plim_0839
ATPase-like protein involved in DNA repair; KEGG: liver stage antigen.
  
     0.722
Plim_2759
KEGG: hypothetical protein LOC686844.
  
     0.665
Plim_1047
PFAM: transposase IS4 family protein; KEGG: pol:Bpro_1661 transposase, IS4 family.
  
     0.643
Plim_3941
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
  
     0.642
Plim_3628
FG-GAP repeat protein.
  
    0.634
Plim_1697
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aeh:Mlg_1435 biopolymer transport protein ExbD/TolR.
  
     0.630
Plim_0167
Hypothetical protein; KEGG: proteophosphoglycan ppg4.
  
     0.614
Plim_0784
PFAM: transglutaminase domain protein; SMART: transglutaminase domain protein; KEGG: dol:Dole_0148 transglutaminase domain- containing protein.
  
     0.584
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.