STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_4208Tetratricopeptide TPR_2 repeat protein. (1001 aa)    
Predicted Functional Partners:
Plim_0839
ATPase-like protein involved in DNA repair; KEGG: liver stage antigen.
  
    0.773
Plim_3628
FG-GAP repeat protein.
  
     0.766
Plim_4194
Tetratricopeptide TPR_2 repeat protein.
  
     0.744
Plim_0838
PFAM: protein of unknown function DUF1355; KEGG: sus:Acid_6438 hypothetical protein.
  
     0.733
Plim_1274
KEGG: scl:sce4409 hypothetical protein.
  
     0.716
Plim_3635
Conserved hypothetical protein.
  
     0.699
Plim_0513
Hypothetical protein; KEGG: amc:MADE_03505 possible biopolymer transport protein, ExbB family.
  
    0.698
Plim_2039
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: sbm:Shew185_2868 amidohydrolase.
  
     0.686
Plim_3818
Oxidoreductase domain protein; KEGG: hypothetical protein.
  
     0.685
Plim_3875
Endonuclease/exonuclease/phosphatase; KEGG: hypothetical protein LOC100150481.
  
     0.664
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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