Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Plim_4213FAD dependent oxidoreductase. (370 aa)    
Predicted Functional Partners:
Plim_0543
PFAM: putative rRNA methylase; KEGG: ppd:Ppro_0564 putative rRNA methylase.
     0.886
Plim_4214
Hypothetical protein.
       0.773
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.577
Plim_2026
Toxin secretion ABC transporter ATP-binding protein; KEGG: mfa:Mfla_2223 ABC transporter related.
  
     0.511
Plim_3644
Protein of unknown function DUF6 transmembrane.
  
     0.498
Plim_4211
Hypothetical protein.
       0.493
Plim_4212
Hypothetical protein.
       0.493
Plim_2027
KEGG: mfa:Mfla_2222 secretion protein HlyD.
  
     0.455
Plim_3878
Glycosyltransferase-like protein; KEGG: proteophosphoglycan ppg4.
  
     0.441
Plim_0675
SMART: Tetratricopeptide domain protein; KEGG: SLEI family protein.
  
     0.411
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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