Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Plim_4227HEAT domain containing protein; KEGG: hypothetical protein LOC100134400. (756 aa)    
Predicted Functional Partners:
Plim_3885
O-antigen polymerase; KEGG: proteophosphoglycan ppg4.
  
     0.550
Plim_3818
Oxidoreductase domain protein; KEGG: hypothetical protein.
  
     0.521
Plim_0839
ATPase-like protein involved in DNA repair; KEGG: liver stage antigen.
  
     0.512
Plim_2023
Hypothetical protein; KEGG: sat:SYN_00008 AAA family ATPase.
  
     0.480
Plim_3354
TPR repeat-containing protein.
  
 
   0.458
Plim_0456
SMART: Parallel beta-helix repeat; KEGG: bmj:BMULJ_04389 outer membrane autotransporter barrel.
  
     0.452
Plim_3846
Parallel beta-helix repeat protein; KEGG: hypothetical protein LOC100134400.
  
     0.452
Plim_2561
Tetratricopeptide TPR_2 repeat protein.
  
     0.440
Plim_1858
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: predicted protein.
  
     0.439
Plim_4194
Tetratricopeptide TPR_2 repeat protein.
  
     0.432
Your Current Organism:
Planctopirus limnophila
NCBI taxonomy Id: 521674
Other names: P. limnophila DSM 3776, Planctomyces limnophilus ATCC 43296, Planctomyces limnophilus DSM 3776, Planctomyces limnophilus str. DSM 3776, Planctomyces limnophilus strain DSM 3776, Planctopirus limnophila DSM 3776, Planctopirus limnophilus DSM 3776
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