M231_06703 protein (Tremella mesenterica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M231_06703

2-Hacid_dh_C domain-containing protein. (365 aa)

Predicted Functional Partners:

M231_02839

0.566

M231_07428

0.532

M231_00657

0.532

M231_01489

0.463

M231_06961

0.460

M231_08115

0.441

M231_04836

0.441

M231_04546

0.439

M231_02346

0.435

M231_01794

0.431

Your Current Organism:

Tremella mesenterica

NCBI taxonomy Id: 5217
Other names: CBS 6973, T. mesenterica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M231_00657	M231_04546	A0A4Q1BV94	A0A4Q1BKP1	Pyruvate kinase; Belongs to the pyruvate kinase family.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.532
M231_00657	M231_04836	A0A4Q1BV94	A0A4Q1BJF0	Pyruvate kinase; Belongs to the pyruvate kinase family.	Glyceraldehyde-3-phosphate dehydrogenase.	0.735
M231_00657	M231_06703	A0A4Q1BV94	A0A4Q1BEZ4	Pyruvate kinase; Belongs to the pyruvate kinase family.	2-Hacid_dh_C domain-containing protein.	0.532
M231_00657	M231_08115	A0A4Q1BV94	A0A4Q1B7I5	Pyruvate kinase; Belongs to the pyruvate kinase family.	OTU domain-containing protein.	0.735
M231_01489	M231_01794	A0A4Q1BTE0	A0A4Q1BSK2	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Thymidylate synthase.	0.890
M231_01489	M231_02346	A0A4Q1BTE0	A0A4Q1BQY9	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Phosphoserine transaminase.	0.493
M231_01489	M231_02839	A0A4Q1BTE0	A0A4Q1BPR3	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Alanine-glyoxylate transaminase/serine-glyoxylate transaminase/serine-pyruvate transaminase.	0.638
M231_01489	M231_04546	A0A4Q1BTE0	A0A4Q1BKP1	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.463
M231_01489	M231_06703	A0A4Q1BTE0	A0A4Q1BEZ4	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	2-Hacid_dh_C domain-containing protein.	0.463
M231_01489	M231_06961	A0A4Q1BTE0	A0A4Q1BER7	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.998
M231_01794	M231_01489	A0A4Q1BSK2	A0A4Q1BTE0	Thymidylate synthase.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.890
M231_01794	M231_02346	A0A4Q1BSK2	A0A4Q1BQY9	Thymidylate synthase.	Phosphoserine transaminase.	0.633
M231_01794	M231_04546	A0A4Q1BSK2	A0A4Q1BKP1	Thymidylate synthase.	Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.431
M231_01794	M231_04836	A0A4Q1BSK2	A0A4Q1BJF0	Thymidylate synthase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.558
M231_01794	M231_06703	A0A4Q1BSK2	A0A4Q1BEZ4	Thymidylate synthase.	2-Hacid_dh_C domain-containing protein.	0.431
M231_01794	M231_06961	A0A4Q1BSK2	A0A4Q1BER7	Thymidylate synthase.	Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.	0.871
M231_01794	M231_08115	A0A4Q1BSK2	A0A4Q1B7I5	Thymidylate synthase.	OTU domain-containing protein.	0.558
M231_02346	M231_01489	A0A4Q1BQY9	A0A4Q1BTE0	Phosphoserine transaminase.	Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.	0.493
M231_02346	M231_01794	A0A4Q1BQY9	A0A4Q1BSK2	Phosphoserine transaminase.	Thymidylate synthase.	0.633
M231_02346	M231_02839	A0A4Q1BQY9	A0A4Q1BPR3	Phosphoserine transaminase.	Alanine-glyoxylate transaminase/serine-glyoxylate transaminase/serine-pyruvate transaminase.	0.598