STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M231_08019Uncharacterized protein. (839 aa)    
Predicted Functional Partners:
M231_06591
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.703
M231_01503
Uncharacterized protein.
   
 0.673
M231_00927
VPS9 domain-containing protein.
   
 0.673
M231_02279
Rab proteins geranylgeranyltransferase; Belongs to the Rab GDI family.
   
 0.651
M231_04174
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
     
 0.641
M231_06226
Uncharacterized protein.
  
0.458
M231_06313
Vesicle-associated membrane protein 7; Belongs to the synaptobrevin family.
   
 
 0.445
M231_00820
GTP-binding protein ypt3.
  
 
0.422
M231_01721
FYVE-type domain-containing protein.
      
 0.420
M231_01860
ADP-ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.
     
0.416
Your Current Organism:
Tremella mesenterica
NCBI taxonomy Id: 5217
Other names: CBS 6973, T. mesenterica
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