M231_06173 protein (Tremella mesenterica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M231_06173

CULLIN_2 domain-containing protein; Belongs to the cullin family. (803 aa)

Predicted Functional Partners:

M231_04743

0.998

M231_07775

0.990

M231_06301

0.982

M231_05984

0.967

M231_03531

0.960

M231_03484

0.953

M231_03257

0.937

M231_01206

0.932

M231_05577

0.924

M231_00789

0.910

Your Current Organism:

Tremella mesenterica

NCBI taxonomy Id: 5217
Other names: CBS 6973, T. mesenterica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M231_00789	M231_01206	A0A4V1M4Z3	A0A4Q1BU05	Ubiquitin-like protein Nedd8.	PCI domain-containing protein.	0.944
M231_00789	M231_03257	A0A4V1M4Z3	A0A4Q1BNI9	Ubiquitin-like protein Nedd8.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.663
M231_00789	M231_03531	A0A4V1M4Z3	A0A4Q1BMV6	Ubiquitin-like protein Nedd8.	COP9 signalosome complex subunit 5.	0.984
M231_00789	M231_04743	A0A4V1M4Z3	A0A4V1M3T2	Ubiquitin-like protein Nedd8.	CPSF_A domain-containing protein.	0.895
M231_00789	M231_05577	A0A4V1M4Z3	A0A4Q1BHN3	Ubiquitin-like protein Nedd8.	MPN domain-containing protein.	0.984
M231_00789	M231_05984	A0A4V1M4Z3	A0A4Q1BGP9	Ubiquitin-like protein Nedd8.	TIP120 domain-containing protein.	0.827
M231_00789	M231_06173	A0A4V1M4Z3	A0A4Q1BGH0	Ubiquitin-like protein Nedd8.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.910
M231_00789	M231_06301	A0A4V1M4Z3	A0A4Q1BDT9	Ubiquitin-like protein Nedd8.	RING-box protein 1A.	0.987
M231_00789	M231_07775	A0A4V1M4Z3	A0A4Q1BFD7	Ubiquitin-like protein Nedd8.	WD_REPEATS_REGION domain-containing protein.	0.715
M231_01206	M231_00789	A0A4Q1BU05	A0A4V1M4Z3	PCI domain-containing protein.	Ubiquitin-like protein Nedd8.	0.944
M231_01206	M231_03257	A0A4Q1BU05	A0A4Q1BNI9	PCI domain-containing protein.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.795
M231_01206	M231_03531	A0A4Q1BU05	A0A4Q1BMV6	PCI domain-containing protein.	COP9 signalosome complex subunit 5.	0.999
M231_01206	M231_04743	A0A4Q1BU05	A0A4V1M3T2	PCI domain-containing protein.	CPSF_A domain-containing protein.	0.854
M231_01206	M231_05577	A0A4Q1BU05	A0A4Q1BHN3	PCI domain-containing protein.	MPN domain-containing protein.	0.999
M231_01206	M231_06173	A0A4Q1BU05	A0A4Q1BGH0	PCI domain-containing protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.932
M231_01206	M231_06301	A0A4Q1BU05	A0A4Q1BDT9	PCI domain-containing protein.	RING-box protein 1A.	0.978
M231_01206	M231_07775	A0A4Q1BU05	A0A4Q1BFD7	PCI domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.732
M231_03257	M231_00789	A0A4Q1BNI9	A0A4V1M4Z3	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	Ubiquitin-like protein Nedd8.	0.663
M231_03257	M231_01206	A0A4Q1BNI9	A0A4Q1BU05	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	PCI domain-containing protein.	0.795
M231_03257	M231_03531	A0A4Q1BNI9	A0A4Q1BMV6	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	COP9 signalosome complex subunit 5.	0.843