M231_02543 protein (Tremella mesenterica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M231_02543

Uncharacterized protein. (421 aa)

Predicted Functional Partners:

M231_07729

0.898

M231_00422

0.898

M231_05552

0.800

M231_02960

0.739

M231_05672

0.683

M231_03372

0.683

M231_02437

0.683

M231_03465

0.671

M231_05913

0.665

M231_04112

0.660

Your Current Organism:

Tremella mesenterica

NCBI taxonomy Id: 5217
Other names: CBS 6973, T. mesenterica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M231_00422	M231_02437	A0A4Q1BWG5	A0A4Q1BQV5	ATP-dependent Clp protease ATP-binding subunit ClpB.	Chaperone DnaK; Belongs to the heat shock protein 70 family.	0.718
M231_00422	M231_02543	A0A4Q1BWG5	A0A4Q1BQ90	ATP-dependent Clp protease ATP-binding subunit ClpB.	Uncharacterized protein.	0.898
M231_00422	M231_02960	A0A4Q1BWG5	A0A4V1M4B3	ATP-dependent Clp protease ATP-binding subunit ClpB.	Chaperone regulator.	0.689
M231_00422	M231_03372	A0A4Q1BWG5	A0A4Q1BN58	ATP-dependent Clp protease ATP-binding subunit ClpB.	Hsp7-like protein; Belongs to the heat shock protein 70 family.	0.802
M231_00422	M231_03465	A0A4Q1BWG5	A0A4Q1BN13	ATP-dependent Clp protease ATP-binding subunit ClpB.	Heat shock 70kDa protein 4.	0.791
M231_00422	M231_04112	A0A4Q1BWG5	A0A4Q1BLI0	ATP-dependent Clp protease ATP-binding subunit ClpB.	Chaperonin GroES; Belongs to the GroES chaperonin family.	0.760
M231_00422	M231_05552	A0A4Q1BWG5	A0A4Q1BHU3	ATP-dependent Clp protease ATP-binding subunit ClpB.	Uncharacterized protein; Belongs to the GrpE family.	0.897
M231_00422	M231_05672	A0A4Q1BWG5	A0A4Q1BHL9	ATP-dependent Clp protease ATP-binding subunit ClpB.	Hsp75-like protein; Belongs to the heat shock protein 70 family.	0.753
M231_00422	M231_05913	A0A4Q1BWG5	A0A4Q1BGY3	ATP-dependent Clp protease ATP-binding subunit ClpB.	Elongation factor 3.	0.626
M231_02437	M231_00422	A0A4Q1BQV5	A0A4Q1BWG5	Chaperone DnaK; Belongs to the heat shock protein 70 family.	ATP-dependent Clp protease ATP-binding subunit ClpB.	0.718
M231_02437	M231_02543	A0A4Q1BQV5	A0A4Q1BQ90	Chaperone DnaK; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.683
M231_02437	M231_02960	A0A4Q1BQV5	A0A4V1M4B3	Chaperone DnaK; Belongs to the heat shock protein 70 family.	Chaperone regulator.	0.890
M231_02437	M231_03372	A0A4Q1BQV5	A0A4Q1BN58	Chaperone DnaK; Belongs to the heat shock protein 70 family.	Hsp7-like protein; Belongs to the heat shock protein 70 family.	0.786
M231_02437	M231_03465	A0A4Q1BQV5	A0A4Q1BN13	Chaperone DnaK; Belongs to the heat shock protein 70 family.	Heat shock 70kDa protein 4.	0.891
M231_02437	M231_04112	A0A4Q1BQV5	A0A4Q1BLI0	Chaperone DnaK; Belongs to the heat shock protein 70 family.	Chaperonin GroES; Belongs to the GroES chaperonin family.	0.755
M231_02437	M231_05552	A0A4Q1BQV5	A0A4Q1BHU3	Chaperone DnaK; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the GrpE family.	0.850
M231_02437	M231_05672	A0A4Q1BQV5	A0A4Q1BHL9	Chaperone DnaK; Belongs to the heat shock protein 70 family.	Hsp75-like protein; Belongs to the heat shock protein 70 family.	0.986
M231_02437	M231_05913	A0A4Q1BQV5	A0A4Q1BGY3	Chaperone DnaK; Belongs to the heat shock protein 70 family.	Elongation factor 3.	0.772
M231_02437	M231_07729	A0A4Q1BQV5	A0A4Q1BBC2	Chaperone DnaK; Belongs to the heat shock protein 70 family.	Heat shock protein; Belongs to the ClpA/ClpB family.	0.718
M231_02543	M231_00422	A0A4Q1BQ90	A0A4Q1BWG5	Uncharacterized protein.	ATP-dependent Clp protease ATP-binding subunit ClpB.	0.898