STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M231_00310ATP-dependent RNA helicase DDX41. (619 aa)    
Predicted Functional Partners:
M231_04401
Peptidylprolyl isomerase domain and WD-repeat protein 1.
   
 0.802
M231_07422
Nkap_C domain-containing protein.
    
  0.761
M231_04409
ATP-dependent RNA helicase DDX35.
   
 0.680
M231_03913
ATP-dependent RNA helicase DHX8/PRP22.
   
 0.680
M231_00992
ATP-dependent RNA helicase prh1.
   
 0.680
M231_07805
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.671
M231_00426
Pre-mRNA-processing factor 17.
    
  0.669
M231_06695
PWI domain-containing protein.
    
  0.664
M231_06370
Pre-mRNA-splicing factor CWC22.
    
  0.660
M231_01462
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
     
 0.660
Your Current Organism:
Tremella mesenterica
NCBI taxonomy Id: 5217
Other names: CBS 6973, T. mesenterica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.