STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000421765_00179Unannotated protein. (325 aa)    
Predicted Functional Partners:
GCA_000421765_00180
Unannotated protein.
    0.996
GCA_000421765_00181
Unannotated protein.
 
    0.922
GCA_000421765_00639
Unannotated protein.
    
  0.764
GCA_000421765_01035
Unannotated protein.
    
  0.763
GCA_000421765_00826
Unannotated protein.
    
  0.760
GCA_000421765_01293
Unannotated protein.
    
  0.759
GCA_000421765_00111
Unannotated protein.
    
  0.738
GCA_000421765_01721
Unannotated protein.
    
  0.704
GCA_000421765_02469
Unannotated protein.
    
  0.704
GCA_000421765_00178
Unannotated protein.
       0.600
Your Current Organism:
Pseudomonas caeni
NCBI taxonomy Id: 521719
Other names: P. caeni DSM 24390, Pseudomonas caeni DSM 24390, Pseudomonas sp. HY-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.