STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000421765_00214Unannotated protein. (194 aa)    
Predicted Functional Partners:
GCA_000421765_00215
Unannotated protein.
 
  
 0.976
GCA_000421765_00213
Unannotated protein.
  
    0.833
GCA_000421765_01418
Unannotated protein.
    
 
 0.827
GCA_000421765_00206
Unannotated protein.
 
   
 0.775
GCA_000421765_02692
Unannotated protein.
  
  
 0.722
GCA_000421765_02253
Unannotated protein.
  
   
 0.647
GCA_000421765_00212
Unannotated protein.
 
   0.638
GCA_000421765_01278
Unannotated protein.
 
   
 0.606
GCA_000421765_02492
Unannotated protein.
 
  
 0.600
GCA_000421765_01831
Unannotated protein.
 
  
 0.595
Your Current Organism:
Pseudomonas caeni
NCBI taxonomy Id: 521719
Other names: P. caeni DSM 24390, Pseudomonas caeni DSM 24390, Pseudomonas sp. HY-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.