STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000421765_00986Unannotated protein. (374 aa)    
Predicted Functional Partners:
GCA_000421765_00987
Unannotated protein.
       0.773
GCA_000421765_01609
Unannotated protein.
 
    0.712
GCA_000421765_01610
Unannotated protein.
 
    0.692
GCA_000421765_02000
Unannotated protein.
 
    0.654
GCA_000421765_00988
Unannotated protein.
       0.642
GCA_000421765_00985
Unannotated protein.
       0.559
GCA_000421765_00989
Unannotated protein.
       0.442
GCA_000421765_00984
Unannotated protein.
       0.422
GCA_000421765_02338
Unannotated protein.
 
     0.403
Your Current Organism:
Pseudomonas caeni
NCBI taxonomy Id: 521719
Other names: P. caeni DSM 24390, Pseudomonas caeni DSM 24390, Pseudomonas sp. HY-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.