STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000421765_01237Unannotated protein. (485 aa)    
Predicted Functional Partners:
GCA_000421765_01240
Unannotated protein.
 
   
 0.887
GCA_000421765_01239
Unannotated protein.
 
  
 0.858
GCA_000421765_01247
Unannotated protein.
  
 
 0.831
GCA_000421765_01238
Unannotated protein.
 
    
0.795
GCA_000421765_00895
Unannotated protein.
  
 
   0.739
GCA_000421765_01241
Unannotated protein.
 
   
 0.735
GCA_000421765_00468
Unannotated protein.
  
    0.707
GCA_000421765_02293
Unannotated protein.
  
     0.677
GCA_000421765_01763
Unannotated protein.
  
     0.665
GCA_000421765_02294
Unannotated protein.
  
     0.660
Your Current Organism:
Pseudomonas caeni
NCBI taxonomy Id: 521719
Other names: P. caeni DSM 24390, Pseudomonas caeni DSM 24390, Pseudomonas sp. HY-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.