STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000421765_01350Unannotated protein. (349 aa)    
Predicted Functional Partners:
GCA_000421765_02618
Unannotated protein.
 
 
 0.985
GCA_000421765_01080
Unannotated protein.
  
 0.886
GCA_000421765_01612
Unannotated protein.
  
 0.886
GCA_000421765_01531
Unannotated protein.
  
 
 0.791
GCA_000421765_01611
Unannotated protein.
    
  0.779
GCA_000421765_01613
Unannotated protein.
 
 
 0.777
GCA_000421765_00594
Unannotated protein.
 
 
 0.772
GCA_000421765_01530
Unannotated protein.
   
 0.772
GCA_000421765_02045
Unannotated protein.
 
 
 0.769
GCA_000421765_00212
Unannotated protein.
     
 0.751
Your Current Organism:
Pseudomonas caeni
NCBI taxonomy Id: 521719
Other names: P. caeni DSM 24390, Pseudomonas caeni DSM 24390, Pseudomonas sp. HY-14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.