STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000421765_02054Unannotated protein. (1086 aa)    
Predicted Functional Partners:
GCA_000421765_02055
Unannotated protein.
 
 0.979
GCA_000421765_02056
Unannotated protein.
 
 
 0.965
GCA_000421765_01059
Unannotated protein.
 
 0.898
GCA_000421765_02053
Unannotated protein.
 
   
 0.821
GCA_000421765_02652
Unannotated protein.
 
 0.721
GCA_000421765_01058
Unannotated protein.
 
  
 0.719
GCA_000421765_00890
Unannotated protein.
 
 0.697
GCA_000421765_02018
Unannotated protein.
 
 0.665
GCA_000421765_01979
Unannotated protein.
 
 0.664
GCA_000421765_00692
Unannotated protein.
  
 0.597
Your Current Organism:
Pseudomonas caeni
NCBI taxonomy Id: 521719
Other names: P. caeni DSM 24390, Pseudomonas caeni DSM 24390, Pseudomonas sp. HY-14
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.