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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV33384.1PFAM: RNA-binding S4 domain protein; KEGG: tbd:Tbd_0509 RNA-binding S4 protein. (134 aa)    
Predicted Functional Partners:
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.913
rpmB
PFAM: ribosomal protein L28; KEGG: rfr:Rfer_3180 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
   0.897
rplQ
PFAM: ribosomal protein L17; KEGG: dar:Daro_0346 LSU ribosomal protein L17P.
   
 
 0.882
ACV33609.1
Hsp33 protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.
  
  
 0.878
rpmI
PFAM: ribosomal protein L35; KEGG: azo:azo1081 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
  
 
   0.875
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
   0.858
rpmA
PFAM: ribosomal protein L27; KEGG: eba:ebC2 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.856
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
   0.856
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: eba:ebC5 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.856
rpmG
PFAM: ribosomal protein L33; KEGG: nmn:NMCC_1822 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.856
Your Current Organism:
Accumulibacter phosphatis
NCBI taxonomy Id: 522306
Other names: Accumulibacter phosphatis UW-1, C. Accumulibacter phosphatis clade IIA str. UW-1, Candidatus Accumulibacter phosphatis Type IIA str. UW-1, Candidatus Accumulibacter phosphatis clade IIA str. UW-1, Candidatus Accumulibacter phosphatis clade IIA strain UW-1
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