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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV33558.1KEGG: reu:Reut_B4633 putative periplasmic protein. (259 aa)    
Predicted Functional Partners:
ACV33559.1
KEGG: reu:Reut_B4632 hypothetical protein.
       0.756
ACV35062.1
PFAM: protein of unknown function UPF0118; KEGG: sfu:Sfum_0593 protein of unknown function UPF0118.
  
     0.685
ACV34592.1
KEGG: rme:Rmet_1904 hypothetical protein.
 
     0.682
ACV36066.1
KEGG: sfu:Sfum_1461 hypothetical protein.
  
     0.682
ACV33488.1
KEGG: pnu:Pnuc_1628 hypothetical protein.
  
     0.645
ACV37306.1
PFAM: MscS Mechanosensitive ion channel; KEGG: cti:RALTA_B0305 putative mechanosensitive ion channel, MscS family.
  
     0.644
ACV34599.1
KEGG: pnu:Pnuc_0885 hypothetical protein.
 
     0.633
ACV35984.1
KEGG: mca:MCA1588 hypothetical protein.
  
     0.610
ACV36067.1
KEGG: reu:Reut_B4586 hypothetical protein.
  
     0.592
ACV35059.1
PFAM: Ion transport 2 domain protein; KEGG: shn:Shewana3_2914 ion transport 2 domain protein.
  
     0.570
Your Current Organism:
Accumulibacter phosphatis
NCBI taxonomy Id: 522306
Other names: Accumulibacter phosphatis UW-1, C. Accumulibacter phosphatis clade IIA str. UW-1, Candidatus Accumulibacter phosphatis Type IIA str. UW-1, Candidatus Accumulibacter phosphatis clade IIA str. UW-1, Candidatus Accumulibacter phosphatis clade IIA strain UW-1
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