Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
ACV35296.1PFAM: protein of unknown function DUF937; KEGG: mpt:Mpe_A0199 hypothetical protein. (155 aa)    
Predicted Functional Partners:
ACV35297.1
KEGG: reu:Reut_B5186 hypothetical protein.
 
     0.571
ACV35194.1
KEGG: dar:Daro_2791 transglycosylase-associated protein.
 
    0.486
ACV35193.1
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: mpt:Mpe_A0662 putative cell wall turnover protein.
 
    0.439
Your Current Organism:
Accumulibacter phosphatis
NCBI taxonomy Id: 522306
Other names: Accumulibacter phosphatis UW-1, C. Accumulibacter phosphatis clade IIA str. UW-1, Candidatus Accumulibacter phosphatis Type IIA str. UW-1, Candidatus Accumulibacter phosphatis clade IIA str. UW-1, Candidatus Accumulibacter phosphatis clade IIA strain UW-1
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