STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV36255.1PFAM: Negative transcriptional regulator; KEGG: pau:PA14_09790 putative transcriptional regulator. (213 aa)    
Predicted Functional Partners:
ACV36256.1
Methyltransferase type 11; PFAM: putative RNA methylase; Methyltransferase type 11; Methyltransferase type 12; KEGG: rxy:Rxyl_0172 methyltransferase type 11.
       0.773
ACV36257.1
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sgl:SG1583 3-demethylubiquinone-9 3-methyltransferase.
       0.773
ACV36254.1
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dar:Daro_2462 PHP, C-terminal.
       0.468
ACV36253.1
TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; KEGG: dar:Daro_2461 SUA5/YciO/YrdC/YwlC; Belongs to the SUA5 family.
       0.451
ACV36252.1
PFAM: peptidase M50; KEGG: dar:Daro_2460 peptidase M50.
       0.448
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.429
ACV36248.1
PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: azo:azo2110 pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family.
       0.405
ACV36249.1
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
       0.405
ACV36250.1
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
       0.405
Your Current Organism:
Accumulibacter phosphatis
NCBI taxonomy Id: 522306
Other names: Accumulibacter phosphatis UW-1, C. Accumulibacter phosphatis clade IIA str. UW-1, Candidatus Accumulibacter phosphatis Type IIA str. UW-1, Candidatus Accumulibacter phosphatis clade IIA str. UW-1, Candidatus Accumulibacter phosphatis clade IIA strain UW-1
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