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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACV36280.1PFAM: glycoside hydrolase family 31; KEGG: blj:BLD_1316 alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family. (898 aa)    
Predicted Functional Partners:
ACV36279.1
KEGG: bac:BamMC406_5515 hypothetical protein.
       0.773
ACV36314.1
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
    
 
 0.714
ACV33483.1
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
 
   0.672
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
   0.650
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
 
 0.645
rpmA
PFAM: ribosomal protein L27; KEGG: eba:ebC2 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
    
   0.627
rpmF
TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: eba:ebC5 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.
    
   0.627
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
   0.627
rpmG
PFAM: ribosomal protein L33; KEGG: nmn:NMCC_1822 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.627
rpmB
PFAM: ribosomal protein L28; KEGG: rfr:Rfer_3180 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
    
   0.627
Your Current Organism:
Accumulibacter phosphatis
NCBI taxonomy Id: 522306
Other names: Accumulibacter phosphatis UW-1, C. Accumulibacter phosphatis clade IIA str. UW-1, Candidatus Accumulibacter phosphatis Type IIA str. UW-1, Candidatus Accumulibacter phosphatis clade IIA str. UW-1, Candidatus Accumulibacter phosphatis clade IIA strain UW-1
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