Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADD66957.1PFAM: Xylose isomerase domain protein TIM barrel; KEGG: dat:HRM2_45640 hypothetical protein. (221 aa)    
Predicted Functional Partners:
ADD66952.1
PFAM: cobalbumin biosynthesis protein; KEGG: dat:HRM2_02230 CobU.
 
  
  0.979
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
    
  0.979
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
    
  0.979
ADD67926.1
ATP/cobalamin adenosyltransferase; KEGG: bgl:bglu_1g06200 putative ATP:cob(I)alamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
   
 
 0.904
ADD66955.1
PFAM: aminotransferase class I and II; KEGG: dal:Dalk_0456 aminotransferase class I and II.
 
     0.831
cobT
Nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
       0.799
ADD68552.1
PFAM: phosphate-selective porin O and P; KEGG: gur:Gura_0451 phosphate-selective porin O and P.
  
     0.636
ADD67869.1
KEGG: pca:Pcar_2763 hypothetical protein.
  
     0.633
ADD69053.1
PFAM: oxidoreductase domain protein; KEGG: noc:Noc_1755 oxidoreductase.
  
  
 0.632
ADD69231.1
Flagellin domain protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
    0.559
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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