STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsDRbsD or FucU transport; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose. (132 aa)    
Predicted Functional Partners:
ADD67023.1
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vha:VIBHAR_06143 D-ribose transporter subunit RbsB.
 
  
 0.976
ADD67022.1
PFAM: inner-membrane translocator; KEGG: vha:VIBHAR_06144 ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.973
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
 
 0.961
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
  
 0.958
ADD69647.1
KEGG: dde:Dde_3311 ABC-type sugar transport system, periplasmic component.
 
  
 0.896
ADD68870.1
KEGG: pfo:Pfl01_2338 ABC transporter-like; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  
 0.822
ADD68871.1
PFAM: inner-membrane translocator; KEGG: pfo:Pfl01_2339 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.821
ADD69692.1
PFAM: PfkB domain protein; KEGG: tgr:Tgr7_0095 PfkB domain protein.
  
  
 0.787
ADD68872.1
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: avi:Avi_5162 ABC transporter binding protein.
 
  
 0.786
ADD67019.1
Transcriptional regulator, LacI family; KEGG: oan:Oant_4373 regulatory protein LacI; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI.
  
  
 0.682
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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