Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67080.1KEGG: dol:Dole_0548 FmdB family regulatory protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB. (82 aa)    
Predicted Functional Partners:
ADD68272.1
KEGG: cja:CJA_1643 hypothetical protein.
  
     0.553
ADD69091.1
PFAM: outer membrane lipoprotein carrier protein LolA; KEGG: csa:Csal_2435 outer-membrane lipoprotein carrier protein.
  
     0.492
ADD67084.1
TIGRFAM: type IV pilus assembly protein PilM; KEGG: acp:A2cp1_0675 type IV pilus assembly protein PilM.
 
     0.487
ADD69057.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: pca:Pcar_1252 outer membrane protein.
  
     0.477
ADD67086.1
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
       0.417
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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