Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67131.1PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; KEGG: mxa:MXAN_3257 heme exporter protein CcmB. (225 aa)    
Predicted Functional Partners:
ADD67130.1
PFAM: cytochrome c assembly protein; KEGG: dde:Dde_1474 cytochrome c-type biogenesis protein CcmC.
 
 0.999
ADD67134.1
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.994
ADD67132.1
KEGG: dal:Dalk_2887 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
  0.981
ADD67133.1
PFAM: cytochrome c assembly protein; KEGG: mxa:MXAN_3253 cytochrome c-type biogenesis protein CcmF.
 
  
 0.972
ADD67135.1
PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: pla:Plav_0455 cytochrome c biogenesis protein transmembrane region.
  
  
 0.541
ADD66867.1
KEGG: sse:Ssed_1651 hypothetical protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
 
   
 0.425
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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