STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD67140.1PFAM: Peptidase M23; KEGG: dal:Dalk_0953 peptidase M23. (305 aa)    
Predicted Functional Partners:
ADD67621.1
KEGG: dat:HRM2_10830 MrcA; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase.
 
   
 0.685
ADD69727.1
PFAM: protein of unknown function DUF583; KEGG: pca:Pcar_3137 hypothetical protein.
 
   
 0.639
ADD68425.1
PFAM: NLP/P60 protein; Sporulation domain protein; KEGG: pca:Pcar_1371 cell wall-associated hydrolase/invasion-associated protein.
  
  
 0.613
ADD66864.1
PFAM: penicillin-binding protein transpeptidase; KEGG: sun:SUN_0350 penicillin-binding protein 1A.
 
   
 0.601
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.
  
   
 0.584
proS
prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...]
       0.574
ADD67138.1
PFAM: MscS Mechanosensitive ion channel; KEGG: pca:Pcar_2988 putative small-conductance mechanosensitive channel.
       0.558
ADD67141.1
Hypothetical protein; KEGG: glo:Glov_3157 tetratricopeptide TPR_2 repeat protein.
     
 0.474
ADD69168.1
KEGG: pca:Pcar_2042 membrane-bound lytic murein transglycosylase D precursor; PFAM: Lytic transglycosylase catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM.
 
  
 0.461
ADD69587.1
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: dde:Dde_1370 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin.
 
   
 0.458
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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