Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADD67350.1TIGRFAM: type IV conjugative transfer system protein TraL; KEGG: ppd:Ppro_0258 hypothetical protein. (89 aa)    
Predicted Functional Partners:
ADD67352.1
KEGG: sat:SYN_01862 hypothetical protein.
       0.799
ADD67353.1
PFAM: TraB pilus assembly family protein; KEGG: sat:SYN_01863 pilus assembly protein.
       0.799
ADD67355.1
KEGG: glo:Glov_0316 sex pilus assembly protein.
       0.799
ADD67349.1
KEGG: sat:SYN_01859 hypothetical protein.
       0.773
ADD67351.1
Hypothetical protein; KEGG: sat:SYN_01861 sex pilus assembly/synthesis protein.
       0.773
ADD67354.1
PFAM: Type IV conjugative transfer system protein TraV.
       0.773
ADD67358.1
PFAM: TraU family protein; KEGG: sat:SYN_01869 conjugal DNA transfer protein.
       0.770
ADD67356.1
Hypothetical protein.
       0.737
ADD67357.1
KEGG: sat:SYN_01868 putative cytoplasmic protein.
       0.737
ADD67359.1
Glutaredoxin 2; KEGG: ppd:Ppro_0197 glutaredoxin 2.
       0.737
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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