Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADD67370.1KEGG: gem:GM21_0791 hypothetical protein. (1376 aa)    
Predicted Functional Partners:
ADD67369.1
PFAM: phosphoadenosine phosphosulfate reductase; KEGG: gem:GM21_0790 phosphoadenosine phosphosulfate reductase.
 
     0.946
ADD67372.1
KEGG: gem:GM21_0793 ATP-dependent Lon-type protease- like protein.
 
     0.941
ADD67371.1
KEGG: gem:GM21_0792 hypothetical protein.
       0.773
ADD67373.1
Hypothetical protein.
       0.751
ADD67368.1
Hypothetical protein.
       0.737
ADD67367.1
KEGG: cjr:CJE0674 transcriptional regulator, putative.
       0.436
ADD67366.1
KEGG: reh:H16_B2389 putative exonuclease; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease.
       0.406
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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