Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADD67438.1TIGRFAM: addiction module antidote protein; KEGG: pay:PAU_01619 hypothetical protein. (102 aa)    
Predicted Functional Partners:
ADD67439.1
KEGG: dol:Dole_2241 addiction module killer protein; TIGRFAM: addiction module killer protein; PFAM: protein of unknown function DUF891.
 
  
 0.956
ADD67440.1
Hypothetical protein; KEGG: abu:Abu_1714 ATPase, putative.
       0.543
ADD67441.1
PFAM: transposase IS3/IS911 family protein; KEGG: dde:Dde_3362 transposase (class V).
       0.543
ADD67442.1
PFAM: Integrase catalytic region; KEGG: pca:Pcar_0539 putative transposase.
       0.502
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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