Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ADD67459.1PFAM: transposase IS4 family protein; KEGG: dal:Dalk_2298 transposase IS4 family protein. (466 aa)    
Predicted Functional Partners:
ADD67440.1
Hypothetical protein; KEGG: abu:Abu_1714 ATPase, putative.
 
    0.582
ADD67372.1
KEGG: gem:GM21_0793 ATP-dependent Lon-type protease- like protein.
  
  
 0.563
ADD67848.1
Superfamily I DNA and RNA helicase and helicase subunits-like protein; KEGG: abu:Abu_1172 putative DNA helicase.
  
    0.552
ADD67458.1
KEGG: shl:Shal_1756 hypothetical protein.
       0.535
ADD67680.1
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: pca:Pcar_1454 RNA-binding protein.
  
    0.526
ADD66957.1
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: dat:HRM2_45640 hypothetical protein.
  
    0.416
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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