Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ADD67507.1KEGG: gsu:GSU2116 hypothetical protein. (315 aa)    
Predicted Functional Partners:
ADD69669.1
KEGG: mca:MCA1124 competence protein F.
   
    0.537
ADD68913.1
PFAM: phosphoribosyltransferase; KEGG: avn:Avin_47930 xanthine phosphoribosyltransferase.
   
    0.534
ADD67506.1
KEGG: glo:Glov_3693 hypothetical protein.
       0.532
ADD69705.1
PFAM: Prephenate dehydrogenase; KEGG: glo:Glov_2149 prephenate dehydrogenase.
  
    0.507
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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