Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67520.1Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: abb:ABBFA_000225 bacterial regulatory protein, TetR family protein. (189 aa)    
Predicted Functional Partners:
ADD67521.1
PFAM: outer membrane efflux protein; KEGG: pca:Pcar_3003 outer membrane efflux protein.
     
 0.775
ADD67522.1
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tcx:Tcr_0056 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.758
ADD67523.1
PFAM: acriflavin resistance protein; KEGG: dde:Dde_0670 AcrB/AcrD/AcrF family transporter; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.755
ADD68259.1
PFAM: regulatory protein TetR; KEGG: dde:Dde_0960 TetR family transcriptional regulator.
  
     0.587
ADD67519.1
KEGG: mes:Meso_3676 hypothetical protein.
       0.528
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.431
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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