Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADD67581.1KEGG: dvm:DvMF_1510 two component, sigma54 specific, transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase. (464 aa)    
Predicted Functional Partners:
ADD68081.1
KEGG: bba:Bd0843 RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor.
 
   
 0.780
ADD69600.1
KEGG: ccv:CCV52592_1439 flagellar motor switch protein FliM; TIGRFAM: flagellar motor switch protein FliM; PFAM: flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein.
  
  
 0.523
ADD67580.1
Hypothetical protein.
       0.487
ADD67620.1
Signal transduction histidine kinase, nitrogen specific, NtrB; KEGG: azo:azo0736 nitrogen regulation protein NR(II); PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein.
  
 
 0.458
ADD67582.1
TIGRFAM: lysine 2,3-aminomutase YodO family protein; KEGG: sfu:Sfum_0711 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein.
       0.455
ADD67583.1
KEGG: sfu:Sfum_0712 D-alanine--D-alanine ligase domain protein; PFAM: D-alanine--D-alanine ligase domain protein.
       0.455
ADD67584.1
PFAM: protein of unknown function DUF201; KEGG: dol:Dole_1891 GCN5-related N- acetyltransferase.
       0.455
ADD67585.1
PFAM: GCN5-related N-acetyltransferase; KEGG: dol:Dole_1891 GCN5-related N- acetyltransferase.
       0.455
fliP
Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
  
  
 0.454
ADD69013.1
KEGG: mxa:MXAN_3348 CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein.
  
 
 0.452
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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