Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67588.1KEGG: dal:Dalk_2025 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (633 aa)    
Predicted Functional Partners:
ADD67586.1
PFAM: ABC-2 type transporter; KEGG: dal:Dalk_2027 ABC-2 type transporter.
  
 0.996
ADD67587.1
PFAM: ABC-2 type transporter; KEGG: dal:Dalk_2026 ABC-2 type transporter.
  
 0.996
ADD67589.1
PFAM: secretion protein HlyD family protein; KEGG: geo:Geob_1779 secretion protein HlyD family protein.
  
 0.959
ADD67590.1
PFAM: Transcriptional regulator TetR; regulatory protein TetR; KEGG: dvu:DVU0057 TetR family transcriptional regulator.
 
   
 0.807
ADD67728.1
KEGG: nis:NIS_1780 ABC transporter, permease.
  
 
 0.610
ADD67591.1
Diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; KEGG: dde:Dde_0867 diguanylate cyclase with PAS/PAC sensor; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein.
       0.532
ADD66971.1
PFAM: ABC-2 type transporter; KEGG: dal:Dalk_3535 ABC-2 type transporter.
  
  
 0.447
ADD67597.1
PFAM: ABC-2 type transporter; KEGG: dal:Dalk_3535 ABC-2 type transporter.
  
  
 0.447
atpC
ATP synthase F1, epsilon subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.400
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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