STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADD67589.1PFAM: secretion protein HlyD family protein; KEGG: geo:Geob_1779 secretion protein HlyD family protein. (343 aa)    
Predicted Functional Partners:
ADD67587.1
PFAM: ABC-2 type transporter; KEGG: dal:Dalk_2026 ABC-2 type transporter.
  
 0.979
ADD67586.1
PFAM: ABC-2 type transporter; KEGG: dal:Dalk_2027 ABC-2 type transporter.
  
 0.977
ADD67588.1
KEGG: dal:Dalk_2025 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.962
ADD66928.1
TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: dps:DP0513 toxin secretion ATP-binding protein; SMART: AAA ATPase.
  
 
 0.810
ADD68245.1
PFAM: outer membrane efflux protein; KEGG: pna:Pnap_4182 outer membrane efflux protein.
 
 
 0.794
ADD67590.1
PFAM: Transcriptional regulator TetR; regulatory protein TetR; KEGG: dvu:DVU0057 TetR family transcriptional regulator.
     
 0.779
ADD67035.1
KEGG: dat:HRM2_15830 RND efflux transporter, outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.
 
 
 0.772
ADD66925.1
KEGG: dps:DP0512 outer membrane (agglutination) protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: OmpA/MotB domain protein; outer membrane efflux protein.
  
 
 0.747
ADD67561.1
KEGG: dat:HRM2_00920 putative outer membrane efflux protein (OprM-family protein); TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein.
 
 
 0.744
ADD69147.1
PFAM: outer membrane efflux protein; KEGG: dat:HRM2_47430 putative outer membrane protein.
 
 
 0.735
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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