Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67602.1PFAM: protein of unknown function DUF1008; KEGG: spl:Spea_3326 hypothetical protein. (165 aa)    
Predicted Functional Partners:
ADD67603.1
Coproporphyrinogen dehydrogenase; PFAM: Radical SAM domain protein; KEGG: vvu:VV2_1615 coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB.
 
   
 0.923
ADD67605.1
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: ecs:ECs2792 hypothetical protein.
 
  
 0.863
ADD67600.1
PFAM: transport system permease protein; KEGG: pol:Bpro_4778 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.781
ADD67599.1
KEGG: spe:Spro_3426 ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
     
 0.779
ADD67601.1
PFAM: periplasmic binding protein; KEGG: scl:sce8314 putative periplasmic substrate- binding protein.
       0.773
ADD67597.1
PFAM: ABC-2 type transporter; KEGG: dal:Dalk_3535 ABC-2 type transporter.
       0.762
ADD67598.1
KEGG: ppd:Ppro_1263 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.762
ADD67604.1
Flavodoxin-like protein; KEGG: kpe:KPK_5329 protoporphyrinogen oxidase.
     
 0.732
ADD67608.1
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: dat:HRM2_00050 ExbD.
  
  
 0.610
ADD67609.1
PFAM: MotA/TolQ/ExbB proton channel; KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein.
  
    0.534
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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