Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ADD67636.1KEGG: gbm:Gbem_2452 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease. (98 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.661
ADD67638.1
PFAM: NUDIX hydrolase; KEGG: gsu:GSU3375 MutT/NUDIX family protein.
       0.613
ADD69057.1
PFAM: outer membrane chaperone Skp (OmpH); KEGG: pca:Pcar_1252 outer membrane protein.
  
     0.600
ADD66812.1
PFAM: Protein of unknown function DUF2232, membrane; KEGG: sfu:Sfum_3186 hypothetical protein.
  
     0.584
ADD67389.1
KEGG: sat:SYN_01886 DNA transfer in the process of conjugation and F pilus assembly protein.
   
 
 0.422
ADD67639.1
KEGG: dal:Dalk_0295 CheC domain protein.
       0.414
Your Current Organism:
Denitrovibrio acetiphilus
NCBI taxonomy Id: 522772
Other names: D. acetiphilus DSM 12809, Denitrovibrio acetiphilus DSM 12809, Denitrovibrio acetiphilus N2460, Denitrovibrio acetiphilus str. DSM 12809, Denitrovibrio acetiphilus strain DSM 12809
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